Current Students
所有的第一篇论文都在 *
Medina Colic
CRISPR/CAS9-based DNA damage response screens reveal gene-drug interactionsDNA Repair
Dan Su,Xu Feng,Medina Colic, Yunfei Wang, Chunchao Zhang, Chao Wang, Mengfan Tang, Traver Hart, Junjie Chen,
Volume 87, 2020, 102803, ISSN 1568-7864, doi: 10.1016/j.dnarep.2020.102803
*鉴定与Drugz的CRISPR屏幕上的化学发生相互作用
Colic M,Wang G,Zimmermann M,Mascall K,McLaughlin M,Bertolet L,Lenoir WF,Moffat J,Angers S,Durocher D,Hart T.
Genome Med. 2019 Aug 22;11(1):52. doi: 10.1186/s13073-019-0665-3.
PMID:31439014
*Chemogenetic interactions in human cancer cells
Colic M, Hart T
Computational and Structural Biotechnology Journal. Volume 17, 2019, Pages 1318-1325, ISSN 2001-0370
Darlan Conterno Minussi
*Breast tumours maintain a reservoir of subclonal diversity during expansion.
Minussi DC,Nicholson MD,Ye H,Davis A,Wang K,Baker T,Tarabichi M,Sei E,Du H,Rabbani M,Peng C,Hu M,Bai S,Bai S,Lin YW,Schalck A,Multani A,Ma Ma J,Ma J,Ma J,McDonaldTO,Casasent A,Barrera A,Chen H,Lim B,Arun B,Meric-Bernstam F,Van Loo P,Michor F,Navin NE。
自然。2021年4月; 592(7853):302-308。doi:10.1038/s41586-021-03357-X。EPUB 2021 3月24日。
PMID: 33762732
*美食者:进化In SilicoCancer Simulator
Darlan Conterno Minussi,Bernardo Henz, Mariana dos Santos Oliveira, Eduardo C. Filippi-Chiela, Manuel M. Oliveira and Guido Lenz
Cancer Res 2019年3月1日(79)(5)1010-1013;DOI:10.1158/0008-5472.CAN-17-3924
Analysis of NTPDase2 in the cell membrane using fluorescence recovery after photobleaching (FRAP)
Kipper,Franciele Cristina,Tamajusuku,Alessandra Sayuri Kikuchi,Minussi,Darlan Conterno, Vargas, José Eduardo, Battastini, Ana Maria Oliveira, Kaczmarek, Elzbieta, Robson, Simon Christopher, Lenz, Guido, A Wink, Márcia Rosângela
Cytometry Part A
24 January 2018, P 232-238, V 93, N 2, @ 1552-4922, doi: 10.1002/cyto.a.23317
A20 Regulates Atherogenic Interferon (IFN)-γ Signaling in Vascular Cells by Modulating Basal IFNβ Levels
Herwig P. Moll, Andy Lee,Darlan C. Minussi,Cleide G. Da Silva,Eva Csizmadia,Manoj Bhasin,Christiane Ferran
J Biol Chem。2014年11月7日;289(45):30912–30924。在线发布2014年9月12日。doi:10.1074/jbc.m114.591966
PMCID:PMC4223299
Nazanin Esmaeili Anvar
*Association between Interleukin 16 Gene Polymorphisms (rs1131445, rs4072111) and Late Onset of Alzheimer’s Disease in Iranian Patients
Nazanin Esmaeili Anvar, Niloofar Bazazzadegan, Mina Ohadi, Kourosh Kamali, Hamidreza Khorram Khorshid
Salmand: Iranian Journal of Ageing 2016, 11(1): 64-71. Doi: 10.21859/sija-110164
*Association between polymorphisms in Interleukin-16 gene and risk of late-onset Alzheimer's disease
Anvar NE, Saliminejad K, Ohadi M, Kamali K, Daneshmand P, Khorshid HR.
J Neurol Sci。2015年11月15日; 358(1-2):324-7。doi:10.1016/j.jns.2015.09.344。EPUB 2015年9月11日。
PMID: 26386715
Siyuan He
TGF-β受体II型的甲基化沉默参与食管鳞状细胞癌的恶性转化
Yarui Ma,Siyuan He, Aiai Gao, Ying Zhang, Qing Zhu, Pei Wang, Beibei Yang, Huihui Yin, Yifei Li, Jinge Song, Pinli Yue, Mo Li, Dandan Zhang, Yun Liu, Xiaobing Wang, Mingzhou Guo, Yuchen Jiao
临床表观遗传学。2020;12: 25. Published online 2020 Feb 11.doi:10.1186/s13148-020-0819-6
PMCID: PMC7014638
*Data mining of esophageal squamous cell carcinoma from The Cancer Genome Atlas database
He SY,Wang XB,Jiao YC。
中华李Za Zhi。2018年7月23日; 40(7):517-522。中国人。doi:10.3760/cma.j.issn.0253-3766.2018.07.007
PMID: 30060360
Swaminathan Kumar
Genesetanalysisofpost-lactational乳腺在volutiongene签名在在flammatoryandtriple-negative breast cancer
Arvind Bambhroliya,Renae D. Van Wyhe,Swaminathan Kumar,Bisrat G. Debeb, Jay P. Reddy, Steve Van Laere, Randa El-Zein, Arvind Rao, Wendy A. Woodward
PLOS ONE。2018;(4): 13 e0192689。2018年4月4日在线发表。doi: 10.1371/journal.pone.0192689
PMCID: PMC5884491
Tapsi Kumar
SCMarker: Ab在itiomarkerselection为了单身的细胞转录组分析
Fang Wang, Shaoheng Liang,Tapsi Kumar, Nicholas Navin, Ken Chen
PLOS Comput Biol。2019年10月;15(10):E1007445。在线发布2019年10月28日。doi: 10.1371/journal.pcbi.1007445
PMCID:PMC6837541
Jake Leighton
跨癌症类型的泛素途径的综合基因组分析。
ge Z,Leighton JS, Wang Y, Peng X, Chen Z, Chen H, Sun Y, Yao F, Li J, Zhang H, Liu J, Shriver CD, Hu H; Cancer Genome Atlas Research Network, Piwnica-Worms H, Ma L, Liang H.
Cell Rep. 2018 Apr 3;23(1):213-226.e3. doi: 10.1016/j.celrep.2018.03.047.
PMID:29617661
Yiyun Lin
用单细胞基因组学推进癌症研究和医学beplay苹果手机能用吗
Lim B,Lin Y,Navin N.
Cancer Cell. 2020 Apr 13;37(4):456-470. doi: 10.1016/j.ccell.2020.03.008.
PMID:32289270
Reprogramming of lipid metabolism in cancer-associated fibroblasts potentiates migration of colorectal cancer cells
Gong J,Lin Y,Zhang H,Liu C,Cheng Z,Yang X,Zhang J,Xiao Y,Sang N,Qian X,Wang L,Cen X,Du X,Zhao Y.
Cell Death Dis. 2020 Apr 23;11(4):267. doi: 10.1038/s41419-020-2434-z. PMID: 32327627; PMCID: PMC7181758
*Cocaine modifies brain lipidome in mice
Yiyun Lin, Hui Gu, Linhong Jiang, Wei Xu, Chunqi Liu, Yan Li, Xinying Qian, Dandan Li, Zhuoling Li, Jing Hu, Huaqin Zhang, Wei Guo, Yinglan Zhao, Xiaobo Cen,
分子和细胞神经科学,第85卷,2017年,第29-44页,ISSN 1044-7431,
Doi: 10.1016/j.mcn.2017.08.004
Remodeling of brain lipidome in methamphetamine-sensitized mice
Linhong Jiang, Hui Gu,Yiyun Lin, Wei Xu, Ruiming Zhu, Jueying Kong, Li Luo, Hailei Long, Bing Liu, Bo Chen, Yinglan Zhao, Xiaobo Cen,
毒理学来信,第279卷,2017年,第67-76页,ISSN 0378-4274,
Doi: 10.1016/j.toxlet.2017.07.214.
阿卡什·米特拉(Akash Mitra)
*空间resolved分析linkgenomicandimmune多样性andrevealunfavorableneutrophil activation在melanoma
阿卡什·米特拉(Akash Mitra), Miles C. Andrews, Whijae Roh, Marianna Petaccia De Macedo, Courtney W. Hudgens, Fernando Carapeto, Shailbala Singh, Alexandre Reuben, Feng Wang, Xizeng Mao, Xingzhi Song, Khalida Wani, Samantha Tippen, Kwok-Shing Ng, Aislyn Schalck,Donald A. Sakellariou-Thompson,Eveline Chen,Sangeetha M. Reddy,Christine N. Spencer,Diana Wiesnoski,Latasha D. Little,Curtis Gumbs,Zachary A.Jianhua Zhang,Chantale Bernatchez,Nicholas Navin,Padmanee Sharma,James P. Allison,Jennifer A. Wargo,Cassian Yee,Michael T. Tetzlaff,Wen-Jen Hwu,Alexander J. Lazar,P。Andrew Futreal
纳特社区。2020;11: 1839. Published online 2020 Apr 15.doi:10.1038/s41467-020-15538-9
PMCID:PMC7160105
骨肉瘤的免疫基因组景观
Chia-Chin Wu,Hannah C. Beird,J。AndrewLivingston,Shailesh Advani,阿卡什·米特拉(Akash Mitra), Shaolong Cao, Alexandre Reuben, Davis Ingram, Wei-Lien Wang, Zhenlin Ju, Cheuk Hong Leung, Heather Lin, Youyun Zheng, Jason Roszik, Wenyi Wang, Shreyaskumar Patel, Robert S. Benjamin, Neeta Somaiah, Anthony P. Conley,Gordon B. Mills,Patrick Hwu,Richard Gorlick,Alexander Lazar,Najat C. Daw,Valerae Lewis,P。Andrew Futreal
纳特社区。2020;11: 1008. Published online 2020 Feb 21.doi: 10.1038/s41467-020-14646-w
PMCID:PMC7035358
亚历山大灌木丛
酸挑战对近端小管产生2型血管紧张素II受体敏感氨的影响
Nagami GT,Plumer AK,Beyda RM,Schachter O.
Am J Physiol肾脏生理学。2014年7月1日; 307(1):F53-7。doi:10.1152/ajprenal.00466.2013。EPUB 2014年5月14日。
PMID:24829505
Keith Sanders
辐射引起的血管损伤的生物标志物
Venkatesulu BP,桑德斯KL,Hsieh CE,Kim BK,Krishnan S.
Cancer Rep (Hoboken). 2019 Apr;2(2):e1152. doi: 10.1002/cnr2.1152. Epub 2018 Dec 3.
PMID: 32721134
Recent advances in radiation therapy of pancreatic cancer
Venkatesulu BP,Hsieh CE,桑德斯KL和Krishnan S.
F1000Research2018,7(F1000教师Rev):1931 doi.org/10.12688/f1000researcbeplay苹果手机能用吗h.16272.1
Aislyn Schalck
通过地形单细胞测序鉴定的乳腺肿瘤中的多隆浸润。
Casasent AK,Schalck A, Gao R, Sei E, Long A, Pangburn W, Casasent T, Meric-Bernstam F, Edgerton ME, Navin NE.
细胞。2018 Jan 11;172(1-2):205-217.e12. doi: 10.1016/j.cell.2017.12.007. Epub 2018 Jan 4.
PMID: 29307488
Sahil Seth
*Pre-existing Functional Heterogeneity of Tumorigenic Compartment as the Origin of Chemoresistance in Pancreatic Tumors
Sahil Seth,Chieh-Yuan Li,I-Lin Ho,Denise Corti,Sara Loponte,Luigi Sapio,Edoardo del Poggetto,Er-Yen Yen,Frederick Scott Robinson,Michael Peoples,Tatiana Karpinets,Tatiana Karpinets,Angela Kay Deem,Tapsi Kumar,Tapsi Kumar,Tapsi Kumar,Xingzzhi Shan,Shan,Shan,Shan,Shan,Shan,Shan,Shan,Shan,Shan,Shan,Shan,Shan,Shan,Shan,Shan,ShanJiang, Ya’an Kang, Jason Fleming, Michael Kim, Jianhua Zhang, Anirban Maitra, Timothy Paul Heffernan, Virginia Giuliani, Giannicola Genovese, Andrew Futreal, Giulio Francesco Draetta, Alessandro Carugo, and Andrea Viale
Cell Reports. 2019 Feb; Vol 26, Issue 6, P1518-1532.E9, DOI: 10.1016/j.celrep.2019.01.048
Ziqiao Wang
*IMIX:通过多摩学数据集成的多元混合模型方法进行关联分析
Ziqiao Wangand Peng Wei (2020)
Bioinformatics,2020,doi:10.1093/bioinformatics/btaa1001
Yun Yan
Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates
Xia B,Yan Y,男爵M,Wagner F,Barkley D,Chiodin M,Kim SY,Keefe DL,Alukal JP,Boeke JD,YanaiI。
细胞。2020年1月23日; 180(2):248-262.E21。doi:10.1016/j.cell.2019.12.015。
PMID: 31978344; PMCID: PMC7891839
Jinaho Zhou
DR-SIP:具有距离限制和循环对称性填料的高阶结构建模协议
Chan J,zou j,Ortiz CL,Chang Chien Ch,Pan RL,Yang LW。
Bioinformatics. 2020 Jan 15;36(2):449-461. doi: 10.1093/bioinformatics/btz579.
PMID: 31347658
S100B作为拮抗剂,以阻止S100A1与RAGE V域之间的相互作用
Khan MI, Su Y-K,zou j,Yang L-W,Chou R-H,Yu C
(2018) PLoS ONE 13(2): e0190545. doi.org/10.1371/journal.pone.0190545